didericis
fe423dc7ba
Add level edge definition to plane depth sequencing paper
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-25 04:08:33 -04:00
didericis
9107a72e0c
Plot graph to graph.png in canonize_and_save_graph after setting planar positions
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-25 03:20:43 -04:00
didericis
9e3e525a5b
Replace plane_depth_labelling with plane_depth_sequencing paper and script, remove unused lib modules
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-24 21:10:06 -04:00
didericis
49f456e467
Move plot_to_data_uri to lib/colored_graphs and rename to plot_colored_graph_to_data_uri
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-24 11:18:23 -04:00
didericis
07ad553568
Move Operation, op_to_transform_id, and operation_sequence_id to lib/operations
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-21 21:24:00 -04:00
didericis
a094250cc8
Move canonize_colored_graph and save_colored_graph to lib/colored_graphs
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-21 21:15:04 -04:00
didericis
2cf51ecbb5
Move outer_face and get_embedding_from_pos to lib/planar_embedding
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Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-21 21:04:17 -04:00
didericis
03f92494f1
Move tutte_embedding to lib, add bash completion, and fix NixOS setup
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- Replace iterative tutte_embedding in lib with numpy direct-solve version from example.py
- Import tutte_embedding into example.py from lib instead of defining it locally
- Fix g._embedding -> g.get_embedding() in outer_face
- Add bash completion to run.sh alongside existing zsh completion
- Use nix-shell -p gcc for plantri build step on NixOS
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-04-21 21:02:22 -04:00
didericis
fc277760af
Add sage code
2026-04-15 20:23:44 -04:00
didericis