fix(orchestrator): reap registry rows whose bottle is no longer running

A registry row only ever left the registry two ways: an explicit
teardown_bottle (the launcher's cleanup callback) or the same-IP supersede
sweep in register(). Neither runs when the launching CLI dies hard, so the
row outlives its container.

That orphan is not inert. Source IPs are recycled by the backend's DHCP and
by_source_ip fail-closes on ambiguity, so a leftover row at a reused address
resolves no policy at all for the next bottle that lands there — and a
bottle with no policy denies every host, which surfaces to the agent as
"host X is not in the allowlist" for hosts that were never the problem.

Add reap_absent/reconcile and call it from the macOS launch path before
registering, so each launch self-heals the registry. Restores the invariant
the data plane needs: at most one active row per live address, and none for
a dead one. The second half matters as much as the first — when several rows
claim a *live* address the newest wins and the rest are swept, otherwise a
recycled address stays ambiguous, which is exactly the bricked state.

The host supplies the live set because the orchestrator runs inside the
infra container and cannot see the backend. A grace window exempts rows
younger than it, so reconciliation cannot race a bottle still coming up, and
a reconcile failure is logged rather than blocking an otherwise-fine launch.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

bot_bottle/backend/macos_container/consolidated_launch.py

@@ -36,9 +36,12 @@ from dataclasses import dataclass
 
 from ...egress import EgressPlan
 from ...git_gate import GitGatePlan
-from ...orchestrator.client import OrchestratorClient
+from ...log import info
+from ...orchestrator.client import OrchestratorClient, OrchestratorClientError
 from ...orchestrator.registration import registration_inputs
 from ..docker.gateway_provision import deprovision_git_gate, provision_git_gate
+from . import util as container_mod
+from .enumerate import CONTAINER_NAME_PREFIX, enumerate_active
 from .gateway import GATEWAY_NETWORK
 from .gateway_provision import AppleGatewayTransport
 from .infra import MacosInfraService, OrchestratorStartError
@@ -89,6 +92,25 @@ def ensure_gateway(
     )
 
 
+def live_source_ips(network: str) -> list[str]:
+    """Every running agent container's address on `network`.
+
+    The reconciliation input: the orchestrator lives inside the infra
+    container and cannot enumerate the host's containers, so the host has to
+    tell it which bottles are actually up. Containers that have not been
+    assigned an address yet contribute nothing (the read is non-fatal) — the
+    reap's grace window, not this list, is what protects an in-flight
+    launch."""
+    ips: list[str] = []
+    for agent in enumerate_active():
+        ip = container_mod.try_container_ipv4_on_network(
+            f"{CONTAINER_NAME_PREFIX}{agent.slug}", network,
+        )
+        if ip:
+            ips.append(ip)
+    return ips
+
+
 def register_agent(
     egress_plan: EgressPlan,
     git_gate_plan: GitGatePlan,
@@ -103,6 +125,16 @@ def register_agent(
     container — it is the attribution key the gateway resolves policy by.
     Raises on failure; the caller tears down."""
     client = OrchestratorClient(endpoint.orchestrator_url)
+    # Self-heal before registering: a launcher that died hard (SIGKILL, closed
+    # terminal, host sleep) never ran its teardown callback, leaving an active
+    # row with no container. vmnet recycles addresses, so such a row can
+    # collide with this bottle's — and `by_source_ip` fail-closes on ambiguity,
+    # which would resolve no policy at all and deny every host. Best-effort: a
+    # reconciliation failure must not block an otherwise-fine launch.
+    try:
+        client.reconcile(live_source_ips(endpoint.network))
+    except OrchestratorClientError as e:
+        info(f"registry reconciliation skipped: {e}")
     inputs = registration_inputs(egress_plan)
     reg = client.register_bottle(
         source_ip, image_ref=image_ref, policy=inputs.policy,
@@ -136,6 +168,7 @@ __all__ = [
     "GatewayEndpoint",
     "LaunchContext",
     "ensure_gateway",
+    "live_source_ips",
     "register_agent",
     "teardown_consolidated",
     "ConsolidatedLaunchError",

bot_bottle/orchestrator/client.py

@@ -15,6 +15,7 @@ from __future__ import annotations
 import json
 import urllib.error
 import urllib.request
+from collections.abc import Iterable
 from dataclasses import dataclass
 
 from ..paths import host_control_plane_token
@@ -147,6 +148,20 @@ class OrchestratorClient:
             raise OrchestratorClientError(f"teardown {bottle_id}: HTTP {status}")
         return True
 
+    def reconcile(
+        self, live_source_ips: Iterable[str], *, grace_seconds: float | None = None,
+    ) -> list[str]:
+        """Drop registry rows for bottles that are no longer running
+        (`POST /reconcile`), returning the reaped bottle ids. `live_source_ips`
+        is the caller's enumeration of its live bottles — the orchestrator
+        can't see the backend from inside the infra container."""
+        body: dict[str, object] = {"live_source_ips": list(live_source_ips)}
+        if grace_seconds is not None:
+            body["grace_seconds"] = grace_seconds
+        payload = self._ok("POST", "/reconcile", body)
+        reaped = payload.get("reaped")
+        return [r for r in reaped if isinstance(r, str)] if isinstance(reaped, list) else []
+
     def set_policy(self, bottle_id: str, policy: str) -> bool:
         """Live-reload a bottle's policy (`PUT /bottles/<id>/policy`). False on
         404 (unknown bottle)."""

bot_bottle/orchestrator/control_plane.py

@@ -13,6 +13,9 @@ vsock / unix-socket portability caveats):
     PUT    /bottles/<bottle_id>/policy -> 200 {"updated": true} | 404  (live reload)
                                          body: {"policy"}
     DELETE /bottles/<bottle_id>        -> 200 {"torn_down": true} | 404  (teardown)
+    POST   /reconcile                 -> 200 {"reaped": [bottle_id, ...]}
+                                         body: {"live_source_ips": [...],
+                                                ["grace_seconds"]}
     POST   /attribute                 -> 200 {"bottle_id"} | 403
     POST   /resolve                   -> 200 {"bottle_id","policy"} | 403
                                          body: {"source_ip","identity_token"}
@@ -141,6 +144,27 @@ def dispatch(  # pylint: disable=too-many-return-statements,too-many-branches
             return 200, {"torn_down": True}
         return 404, {"error": "no such bottle"}
 
+    if method == "POST" and route == "/reconcile":
+        # Host-driven self-heal: the caller enumerates its live bottles (only
+        # the host can see the backend) and the orchestrator drops rows for
+        # every other active bottle. Trusted-caller only — an agent that could
+        # reach this would be able to unregister its neighbours.
+        try:
+            data = _parse_json_object(body)
+        except ValueError as e:
+            return 400, {"error": f"invalid JSON: {e}"}
+        raw_ips = data.get("live_source_ips")
+        if not isinstance(raw_ips, list):
+            return 400, {"error": "live_source_ips (list of strings) is required"}
+        live = [ip for ip in raw_ips if isinstance(ip, str) and ip]
+        grace = data.get("grace_seconds")
+        kwargs = (
+            {"grace_seconds": float(grace)}
+            if isinstance(grace, (int, float)) and not isinstance(grace, bool)
+            else {}
+        )
+        return 200, {"reaped": orch.reconcile(live, **kwargs)}
+
     if method == "POST" and route == "/attribute":
         try:
             data = _parse_json_object(body)

bot_bottle/orchestrator/registry.py

@@ -32,6 +32,7 @@ import hmac
 import secrets
 import sqlite3
 import time
+from collections.abc import Iterable
 from dataclasses import dataclass
 from pathlib import Path
 
@@ -42,6 +43,12 @@ from ..paths import host_db_path
 # 256 bits of urandom, URL-safe — unguessable per-bottle identity token.
 IDENTITY_TOKEN_BYTES = 32
 
+# How recently a row must have been registered to be exempt from
+# `reap_absent`. Covers the window between `container run` and the address
+# becoming visible to another launch's enumeration, so reconciliation never
+# reaps a bottle that is still coming up.
+DEFAULT_REAP_GRACE_SECONDS = 120.0
+
 
 def new_identity_token() -> str:
     """A fresh per-bottle identity token (PRD 0070 attribution defence)."""
@@ -225,6 +232,70 @@ class RegistryStore(DbStore):
             ).fetchall()
         return [_row_to_record(r) for r in rows]
 
+    def reap_absent(
+        self,
+        live_source_ips: Iterable[str],
+        *,
+        grace_seconds: float = DEFAULT_REAP_GRACE_SECONDS,
+        now: float | None = None,
+    ) -> list[BottleRecord]:
+        """Delete active rows whose source IP is not held by a live bottle.
+
+        A row only ever leaves the registry two ways: an explicit
+        `teardown_bottle` (the launcher's cleanup callback) or the supersede
+        sweep in `register`. Neither runs when the launching CLI dies hard —
+        SIGKILL, a closed terminal, a host sleep/crash — so the row outlives
+        its container. That orphan is not inert: source IPs are recycled by
+        the backend's DHCP, and `by_source_ip` fail-closes on ambiguity, so a
+        leftover row at a reused address can brick the *next* bottle that
+        lands on it (no policy resolved -> every host denied, reported to the
+        agent as "not in the allowlist"). Reconciling against the live set at
+        launch keeps the registry from accumulating those landmines.
+
+        Restores the invariant the data plane needs: **at most one active row
+        per live address, and none at all for a dead one.** Two cases, because
+        a dead bottle's address may already have been handed to a live one:
+
+          * no live bottle holds the address — every row there is an orphan;
+          * a live bottle holds it but several rows claim it — the newest
+            registration is authoritative and the rest are orphans, the same
+            rule `register`'s same-IP supersede sweep applies. Without this
+            second case a recycled address stays ambiguous, which is exactly
+            the state that resolves no policy.
+
+        `grace_seconds` protects an in-flight launch: registration happens
+        moments after `container run`, and a concurrent launch's address may
+        not be visible to the caller's enumeration yet. Rows younger than the
+        grace window are never reaped, so reconciliation can't race a bottle
+        that is still coming up. Returns the deleted records."""
+        live = {ip for ip in live_source_ips if ip}
+        cutoff = (time.time() if now is None else now) - grace_seconds
+        with self._connection() as conn:
+            rows = conn.execute(
+                "SELECT * FROM orchestrator_bottles WHERE state = 'active'",
+            ).fetchall()
+            by_ip: dict[str, list[BottleRecord]] = {}
+            for row in rows:
+                rec = _row_to_record(row)
+                by_ip.setdefault(rec.source_ip, []).append(rec)
+            candidates: list[BottleRecord] = []
+            for ip, recs in by_ip.items():
+                if ip not in live:
+                    candidates.extend(recs)
+                    continue
+                # Keep the newest claim on a live address; supersede the rest.
+                recs.sort(key=lambda r: r.created_at)
+                candidates.extend(recs[:-1])
+            doomed = [r for r in candidates if r.created_at <= cutoff]
+            for rec in doomed:
+                conn.execute(
+                    "DELETE FROM orchestrator_bottles WHERE bottle_id = ?",
+                    (rec.bottle_id,),
+                )
+        if doomed:
+            self._chmod()
+        return doomed
+
     def by_source_ip(self, source_ip: str) -> BottleRecord | None:
         """Network-layer attribution: the single active bottle at this source
         IP, or None if unknown or ambiguous (more than one — a
@@ -262,4 +333,5 @@ __all__ = [
     "new_identity_token",
     "default_db_path",
     "IDENTITY_TOKEN_BYTES",
+    "DEFAULT_REAP_GRACE_SECONDS",
 ]

bot_bottle/orchestrator/service.py

@@ -13,15 +13,20 @@ Launch lifecycle:
     and returns the record. If the broker rejects/fails, the registry entry
     is rolled back so a failed launch leaves no orphan.
   * `teardown_bottle` sends a signed teardown request, then deregisters.
+  * `reconcile` sweeps rows whose bottle is no longer running — the
+    self-heal for the teardown paths that never got to run (a hard-killed
+    launcher), since an orphan row at a recycled source IP bricks the next
+    bottle that lands on it.
 """
 
 from __future__ import annotations
 
 import json
+from collections.abc import Iterable
 from datetime import datetime, timezone
 
 from .broker import LaunchBroker, LaunchRequest, sign_request
-from .registry import BottleRecord, RegistryStore
+from .registry import DEFAULT_REAP_GRACE_SECONDS, BottleRecord, RegistryStore
 from .gateway import Gateway
 from ..supervise import (
     AuditEntry,
@@ -117,6 +122,30 @@ class Orchestrator:
         self._tokens.pop(bottle_id, None)
         return True
 
+    def reconcile(
+        self,
+        live_source_ips: Iterable[str],
+        *,
+        grace_seconds: float = DEFAULT_REAP_GRACE_SECONDS,
+    ) -> list[str]:
+        """Drop registry rows for bottles that are no longer running, and
+        forget their in-memory egress tokens. Returns the reaped bottle ids.
+
+        The caller supplies the live set because only the host can enumerate
+        its own containers — the orchestrator runs *inside* the infra
+        container and has no view of the backend. Deliberately does not
+        broker a teardown: the container is already gone, so there is nothing
+        to stop, and a broker error must not stop the sweep from clearing
+        the row that would otherwise brick the next bottle at that address.
+
+        See `RegistryStore.reap_absent` for why orphans accumulate and why
+        they are harmful rather than merely untidy."""
+        reaped = self.registry.reap_absent(
+            live_source_ips, grace_seconds=grace_seconds)
+        for rec in reaped:
+            self._tokens.pop(rec.bottle_id, None)
+        return [rec.bottle_id for rec in reaped]
+
     def tokens_for(self, bottle_id: str) -> dict[str, str]:
         """The bottle's in-memory egress auth tokens (env_name -> value), or
         empty. The gateway injects these per request; they are never