refactor: move bot_bottle_root/host_db_path to paths; kill the monkeypatch (#352)

Create bot_bottle/paths.py as the canonical home for the app-root path
helpers (bot_bottle_root, host_db_path, HOST_DB_FILENAME) — foundational,
not supervise- or db-specific. `bot_bottle_root()` now honours a
BOT_BOTTLE_ROOT env override.

Repoint every consumer (supervise, supervise_types, db_store, queue_store,
audit_store, store_manager, bottle_state, cli/supervise, docker/cleanup,
orchestrator/registry) at paths; remove the definitions (and supervise's
duplicate host_db_path) and the now-dead `import sys`. Add paths.py to the
sidecar bundle (Dockerfile.sidecars) for the flat-import copies.

Tests: replace ~12 files' monkeypatching of supervise.bot_bottle_root (and
the flat/pkg/supervise_types triple-patch dance) with a single
`use_bottle_root()` helper that sets BOT_BOTTLE_ROOT — every module and
flat/package copy reads the same env var, so one override covers them all.
Net -97 lines. Behaviour-preserving: full unit suite unchanged (only the
pre-existing /bin/sleep sidecar-init errors remain).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01WBMWTEtQdJ4W5UrWuLHCck

bot_bottle/orchestrator/registry.py

@@ -35,8 +35,9 @@ import time
 from dataclasses import dataclass
 from pathlib import Path
 
-from ..db_store import DbStore, host_db_path
+from ..db_store import DbStore
 from ..migrations import TableMigrations
+from ..paths import host_db_path
 
 # 256 bits of urandom, URL-safe — unguessable per-bottle identity token.
 IDENTITY_TOKEN_BYTES = 32